Later On

A blog written for those whose interests more or less match mine.

Trade-offs in pushing the replication of scientific experiments

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A very interesting post by Andrew Gelman:

Raghuveer Parthasarathy pointed me to an article in Nature by Mina Bissell, who writes, “The push to replicate findings could shelve promising research and unfairly damage the reputations of careful, meticulous scientists.”

I can see where she’s coming from: if you work hard day after day in the lab, it’s gotta be a bit frustrating to find all your work questioned, for the frauds of the Dr. Anil Pottis and Diederik Stapels to be treated as a reason for everyone else’s work to be considered guilty until proven innocent.

That said, I pretty much disagree with Bissell’s article, and really the best thing I can say about it is that I think it’s a good sign that the push for replication is so strong that now there’s a backlash against it. Traditionally, leading scientists have been able to simply ignore the push for replication. If they are feeling that the replication movement is strong enough that they need to fight it, that to me is good news.

I’ll explain a bit in the context of Bissell’s article. She writes:

Articles in both the scientific and popular press have addressed how frequently biologists are unable to repeat each other’s experiments, even when using the same materials and methods. But I am concerned about the latest drive by some in biology to have results replicated by an independent, self-appointed entity that will charge for the service. The US National Institutes of Health is considering making validation routine for certain types of experiments, including the basic science that leads to clinical trials.

But, as she points out, such replications will be costly. As she puts it:

Isn’t reproducibility the bedrock of the scientific process? Yes, up to a point. But it is sometimes much easier not to replicate than to replicate studies, because the techniques and reagents are sophisticated, time-consuming and difficult to master. In the past ten years, every paper published on which I have been senior author has taken between four and six years to complete, and at times much longer. People in my lab often need months — if not a year — to replicate some of the experiments we have done . . .

So, yes, if we require everything to be replicate, it will reduce the resources that are available to do new research.

Replication is always a concern when dealing with systems as complex as the three-dimensional cell cultures routinely used in my lab. But with time and careful consideration of experimental conditions, they [Bissell’s students and postdocs], and others, have always managed to replicate our previous data.

If all science were like Bissell’s, I guess we’d be in great shape. In fact, given her track record, perhaps we could some sort of lifetime seal of approval to the work in her lab, and agree in the future to trust all her data without need for replication.

The problem is that there appear to be labs without 100% successful replication rates. Not just fraud (although, yes, that does exist); and not just people cutting corners, for example, improperly excluding cases in a clinical trial (although, yes, that does exist); and not just selection bias and measurement error (although, yes, these do exist too); but just the usual story of results that don’t hold up under replication, perhaps because the published results just happened to stand out in an initial dataset (as Vul et al. pointed out in the context of imaging studies in neuroscience) or because certain effects are variable and appear in some settings and not in others. Lots of reasons. In any case, replications do fail, even with time and careful consideration of experimental conditions. In that sense, Bissell indeed has to pay for the sins of others, but I think that’s inevitable: in any system that is less than 100% perfect, some effort ends up being spent on checking things that, retrospectively, turned out to be ok.

Later on, Bissell writes: . . .

Continue reading.

Written by LeisureGuy

19 December 2013 at 12:22 pm

Posted in Science

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